SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

UBA-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 39 SUPERFAMILY models representing the UBA-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050158 584 2008-09-10 d1vega_ UBA domain
0050610 262 2008-09-10 d1wj7a1 UBA domain
0052228 841 2008-09-10 d2cpwa1 UBA domain
0048854 61 2008-09-10 d1q02a_ UBA domain
0050528 487 2008-09-10 d1wgna_ UBA domain
0052204 43 2008-09-10 d2cosa1 UBA domain
0052474 320 2008-09-10 d2dnaa1 UBA domain
0050161 1054 2008-09-10 d1veka_ UBA domain
0052414 160 2008-09-10 d2daha1 UBA domain
0046704 334 2008-09-10 d1f4ia_ UBA domain
0050150 47 2008-09-10 d1vdla_ UBA domain
0050599 1344 2008-09-10 d1wiva_ UBA domain
0053932 1073 2010-05-31 d2g3qa1 UBA domain
0048763 7 2008-09-10 d1pgya_ UBA domain
0052068 46 2008-09-10 d2bwba1 UBA domain
0052455 1152 2008-09-10 d2dkla1 UBA domain
0047355 1170 2008-09-10 d1ifya_ UBA domain
0050160 296 2008-09-10 d1veja1 UBA domain
0050615 1512 2008-09-10 d1wjia_ UBA domain
0052263 562 2008-09-10 d2crna1 UBA domain
0049688 35 2008-09-10 d1ttea1 UBA domain
0050552 1336 2008-09-10 d1whca_ UBA domain
0052215 66 2008-09-10 d2cp8a1 UBA domain
0053664 3 2010-05-31 d1z96a1 UBA domain
0048626 340 2008-09-10 d1oqya2 UBA domain
0050173 1361 2008-09-10 d1vg5a_ UBA domain
0051335 8 2008-09-10 d1ylaa1 UBA domain
0050902 998 2008-09-10 d1xb2b1 TS-N domain
0052216 479 2008-09-10 d2cp9a1 TS-N domain
0035061 249 2005-09-08 d1aipc1 TS-N domain
0046543 500 2008-09-10 d1efub3 TS-N domain
0047021 65 2008-09-10 d1go5a_ TAP-C domain-like
0044670 289 2005-09-08 d1v92a_ TAP-C domain-like
0042026 2 2005-09-08 d1otra_ CUE domain
0048193 175 2008-09-10 d1mn3a_ CUE domain
0042142 37 2005-09-08 d1p3qr_ CUE domain
0050526 258 2008-09-10 d1wgla_ CUE domain
0042141 38 2005-09-08 d1p3qq_ CUE domain
0052431 79 2008-09-10 d2di0a1 CUE domain