SUPERFAMILY 1.75 HMM library and genome assignments server

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S13-like H2TH domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 9 SUPERFAMILY models representing the S13-like H2TH domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053988 914 2010-05-31 d2gy9m1 Ribosomal protein S13
0037623 326 2005-09-08 d1fjgm_ Ribosomal protein S13
0036934 296 2005-09-08 d1ee8a1 Middle domain of MutM-like DNA repair proteins
0041471 292 2005-09-08 d1nnja1 Middle domain of MutM-like DNA repair proteins
0039898 285 2005-09-08 d1k3xa1 Middle domain of MutM-like DNA repair proteins
0049091 1069 2008-09-10 d1r2za1 Middle domain of MutM-like DNA repair proteins
0043945 216 2005-09-08 d1tdha1 Middle domain of MutM-like DNA repair proteins
0039948 290 2005-09-08 d1k82a1 Middle domain of MutM-like DNA repair proteins
0041084 379 2005-09-08 d1mu5a1 Topoisomerase VI-B subunit middle domain