SUPERFAMILY 1.75 HMM library and genome assignments server

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S15/NS1 RNA-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 9 SUPERFAMILY models representing the S15/NS1 RNA-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050942 238 2008-09-10 d1xeqa1 N-terminal, RNA-binding domain of nonstructural protein NS1
0035059 25 2005-09-08 d1aila_ N-terminal, RNA-binding domain of nonstructural protein NS1
0036463 323 2005-09-08 d1dk1a_ Ribosomal protein S15
0034846 322 2005-09-08 d1a32a_ Ribosomal protein S15
0053621 964 2010-05-31 d1vs5o1 Ribosomal protein S15
0037893 323 2005-09-08 d1g1xb_ Ribosomal protein S15
0037853 97 2005-09-08 d1fyja_ a tRNA synthase domain
0043152 96 2005-09-08 d1r6ta1 a tRNA synthase domain
0036236 100 2005-09-08 d1d2da_ a tRNA synthase domain