SUPERFAMILY 1.75 HMM library and genome assignments server

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Acyl-CoA dehydrogenase C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 16 SUPERFAMILY models representing the Acyl-CoA dehydrogenase C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049821 120 2008-09-10 d1u8va1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0043628 1593 2005-09-08 d1siqa1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0052369 7880 2008-09-10 d2d29a1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0039700 1969 2005-09-08 d1jqia1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0036987 1824 2005-09-08 d1egda1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0043402 1811 2005-09-08 d1rx0a1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0052089 3977 2008-09-10 d2c12a1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0039219 1613 2005-09-08 d1ivha1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0049931 7574 2008-09-10 d1ukwa1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0035713 1923 2005-09-08 d1buca1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0045539 1818 2005-09-08 d3mdda1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0043101 1560 2005-09-08 d1r2ja1 Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
0039175 395 2005-09-08 d1is2a1 acyl-CoA oxidase C-terminal domains
0050325 1203 2008-09-10 d1w07a1 acyl-CoA oxidase C-terminal domains
0047430 221 2008-09-10 d1is2a2 acyl-CoA oxidase C-terminal domains
0050326 216 2008-09-10 d1w07a2 acyl-CoA oxidase C-terminal domains