SUPERFAMILY 1.75 HMM library and genome assignments server

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Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035690 336 2005-09-08 d1bs2a1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0049755 1073 2008-09-10 d1u0bb1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0039227 880 2005-09-08 d1ivsa2 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0038401 667 2005-09-08 d1h3na1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0043347 730 2005-09-08 d1rqga1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0039121 335 2005-09-08 d1iq0a1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0037566 650 2005-09-08 d1ffya1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0052383 1353 2008-09-10 d2d5ba1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0042946 362 2005-09-08 d1qqta1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
0039069 897 2005-09-08 d1ilea1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases