SUPERFAMILY 1.75 HMM library and genome assignments server

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ACP-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 11 SUPERFAMILY models representing the ACP-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0044845 1449 2005-09-08 d1vkua_ Acyl-carrier protein (ACP)
0040143 1567 2005-09-08 d1klpa_ Acyl-carrier protein (ACP)
0054241 2180 2010-05-31 d2jq4a1 Acyl-carrier protein (ACP)
0041986 1674 2005-09-08 d1or5a_ Acyl-carrier protein (ACP)
0037430 1355 2005-09-08 d1f80d_ Acyl-carrier protein (ACP)
0035027 1675 2005-09-08 d1af8a_ Acyl-carrier protein (ACP)
0049566 6427 2008-09-10 d1t8ka_ Acyl-carrier protein (ACP)
0041515 1333 2005-09-08 d1nq4a_ Acyl-carrier protein (ACP)
0054530 6037 2010-05-31 d2pnga1 Acyl-carrier protein (ACP)
0036515 2690 2005-09-08 d1dnya_ Peptidyl carrier domain
0036619 898 2005-09-08 d1dv5a_ apo-D-alanyl carrier protein