SUPERFAMILY 1.75 HMM library and genome assignments server

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lambda repressor-like DNA-binding domains superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 43 SUPERFAMILY models representing the lambda repressor-like DNA-binding domains superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035201 181 2005-09-08 d1au7a2 POU-specific domain
0036752 181 2005-09-08 d1e3oc2 POU-specific domain
0038966 106 2005-09-08 d1ic8a2 POU-specific domain
0049180 194 2008-09-10 d1rioa_ Phage repressors
0045765 4051 2008-09-10 d1adra_ Phage repressors
0043707 1207 2005-09-08 d1sq8a_ Phage repressors
0041348 40 2005-09-08 d1nera_ Phage repressors
0053325 24 2008-09-10 d3orca_ Phage repressors
0052264 2229 2008-09-10 d2croa_ Phage repressors
0043143 977 2005-09-08 d1r69a_ Phage repressors
0049284 72 2008-09-10 d1rzsa_ Phage repressors
0036085 8 2005-09-08 d1copd_ Phage repressors
0054127 1098 2010-05-31 d2icta1 SinR domain-like
0051234 9016 2008-09-10 d1y7ya1 SinR domain-like
0054369 4397 2010-05-31 d2ofya1 SinR domain-like
0049999 2006 2008-09-10 d1utxa_ SinR domain-like
0054537 3671 2010-05-31 d2ppxa1 SinR domain-like
0051908 9448 2008-09-10 d2b5aa1 SinR domain-like
0045855 4681 2008-09-10 d1b0na2 SinR domain-like
0052016 1585 2008-09-10 d2bnma1 SinR domain-like
0046409 521 2008-09-10 d1dw9a1 Cyanase N-terminal domain
0042440 1081 2005-09-08 d1prua_ GalR/LacI-like bacterial regulator
0036955 1084 2005-09-08 d1efaa1 GalR/LacI-like bacterial regulator
0051985 4802 2008-09-10 d2bjca1 GalR/LacI-like bacterial regulator
0044906 1081 2005-09-08 d1vpwa1 GalR/LacI-like bacterial regulator
0053040 4792 2008-09-10 d2hsga1 GalR/LacI-like bacterial regulator
0044558 1051 2005-09-08 d1uxda_ GalR/LacI-like bacterial regulator
0049316 17 2008-09-10 d1s4ka_ YdiL-like
0054428 12 2010-05-31 d2ox6a1 YdiL-like
0050779 366 2008-09-10 d1x2la1 CUT domain
0050546 332 2008-09-10 d1wh6a_ CUT domain
0052277 269 2008-09-10 d2csfa1 CUT domain
0050602 350 2008-09-10 d1wiza_ CUT domain
0051388 353 2008-09-10 d1ysea1 CUT domain
0050548 286 2008-09-10 d1wh8a_ CUT domain
0049337 370 2008-09-10 d1s7ea2 CUT domain
0051249 8982 2008-09-10 d1y9qa1 Probable transcriptional regulator VC1968, N-terminal domain
0051630 44 2008-09-10 d1zs4a1 Bacteriophage CII protein
0051837 30 2008-09-10 d2auwa1 NE0471 C-terminal domain-like
0051844 1480 2008-09-10 d2awia1 PrgX N-terminal domain-like
0050823 7091 2008-09-10 d1x57a1 EDF1-like
0054323 815 2010-05-31 d2o38a1 NE1354
0051711 3533 2008-09-10 d2a6ca1 NE1354