SUPERFAMILY 1.75 HMM library and genome assignments server

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HLH, helix-loop-helix DNA-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the HLH, helix-loop-helix DNA-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035113 1330 2005-09-08 d1an4a_ HLH, helix-loop-helix DNA-binding domain
0034803 1041 2005-09-08 d1a0aa_ HLH, helix-loop-helix DNA-binding domain
0043065 1446 2005-09-08 d1r05a_ HLH, helix-loop-helix DNA-binding domain
0040898 1277 2005-09-08 d1mdya_ HLH, helix-loop-helix DNA-binding domain
0035112 1442 2005-09-08 d1an2a_ HLH, helix-loop-helix DNA-binding domain
0041452 907 2005-09-08 d1nlwa_ HLH, helix-loop-helix DNA-binding domain
0038629 1484 2005-09-08 d1hloa_ HLH, helix-loop-helix DNA-binding domain
0035101 1551 2005-09-08 d1am9a_ HLH, helix-loop-helix DNA-binding domain
0044409 1000 2005-09-08 d1uklc_ HLH, helix-loop-helix DNA-binding domain
0041437 1263 2005-09-08 d1nkpa_ HLH, helix-loop-helix DNA-binding domain