SUPERFAMILY 1.75 HMM library and genome assignments server

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Calponin-homology domain, CH-domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 17 SUPERFAMILY models representing the Calponin-homology domain, CH-domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035124 930 2005-09-08 d1aoaa1 Calponin-homology domain, CH-domain
0044622 229 2005-09-08 d1v5ka_ Calponin-homology domain, CH-domain
0050621 1152 2008-09-10 d1wjoa_ Calponin-homology domain, CH-domain
0042512 537 2005-09-08 d1pxya_ Calponin-homology domain, CH-domain
0048700 554 2008-09-10 d1p5sa_ Calponin-homology domain, CH-domain
0035551 629 2005-09-08 d1bhda_ Calponin-homology domain, CH-domain
0046420 3095 2008-09-10 d1dxxa2 Calponin-homology domain, CH-domain
0044393 330 2005-09-08 d1ujoa_ Calponin-homology domain, CH-domain
0048913 1049 2008-09-10 d1qaga1 Calponin-homology domain, CH-domain
0038432 821 2005-09-08 d1h67a_ Calponin-homology domain, CH-domain
0048132 3144 2008-09-10 d1mb8a2 Calponin-homology domain, CH-domain
0035125 349 2005-09-08 d1aoaa2 Calponin-homology domain, CH-domain
0046419 1228 2008-09-10 d1dxxa1 Calponin-homology domain, CH-domain
0043370 405 2005-09-08 d1rt8a_ Calponin-homology domain, CH-domain
0048721 532 2008-09-10 d1pa7a_ Calponin-homology domain, CH-domain
0035604 865 2005-09-08 d1bkra_ Calponin-homology domain, CH-domain
0048131 959 2008-09-10 d1mb8a1 Calponin-homology domain, CH-domain