SUPERFAMILY 1.75 HMM library and genome assignments server

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Transducin (alpha subunit), insertion domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Transducin (alpha subunit), insertion domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0051552 1192 2008-09-10 d1zcba1 Transducin (alpha subunit), insertion domain
0036001 348 2005-09-08 d1cipa1 Transducin (alpha subunit), insertion domain
0051550 1180 2008-09-10 d1zcaa1 Transducin (alpha subunit), insertion domain
0035280 343 2005-09-08 d1azsc1 Transducin (alpha subunit), insertion domain
0051951 1194 2008-09-10 d2bcjq1 Transducin (alpha subunit), insertion domain
0043922 346 2005-09-08 d1tada1 Transducin (alpha subunit), insertion domain