SUPERFAMILY 1.75 HMM library and genome assignments server

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TrpR-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the TrpR-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049681 210 2008-09-10 d1trra_ Trp repressor, TrpR
0047944 1041 2008-09-10 d1l8qa1 Chromosomal replication initiation factor DnaA C-terminal domain IV
0047496 1048 2008-09-10 d1j1va_ Chromosomal replication initiation factor DnaA C-terminal domain IV
0054350 549 2010-05-31 d2oa4a1 SPO1678-like