SUPERFAMILY 1.75 HMM library and genome assignments server

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ARM repeat superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 44 SUPERFAMILY models representing the ARM repeat superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042771 1088 2005-09-08 d1qgra_ Armadillo repeat
0047335 1421 2008-09-10 d1iala_ Armadillo repeat
0050416 1739 2008-09-10 d1wa5b_ Armadillo repeat
0048921 1738 2008-09-10 d1qbkb_ Armadillo repeat
0046912 3077 2008-09-10 d1g3ja_ Armadillo repeat
0050417 2666 2008-09-10 d1wa5c_ Armadillo repeat
0052026 1515 2008-09-10 d2bpta1 Armadillo repeat
0045874 4199 2008-09-10 d1b3ua_ HEAT repeat
0049802 4485 2008-09-10 d1u6gc_ HEAT repeat
0045897 227 2008-09-10 d1b89a_ Clathrin heavy chain proximal leg segment
0045990 113 2008-09-10 d1bpoa1 Clathrin heavy-chain linker domain
0048021 344 2008-09-10 d1lrva_ Leucine-rich repeat variant
0046492 473 2008-09-10 d1e8ya1 Phoshoinositide 3-kinase (PI3K) helical domain
0047230 140 2008-09-10 d1hs6a1 Leukotriene A4 hydrolase C-terminal domain
0048121 875 2008-09-10 d1m8za_ Pumilio repeat
0047214 80 2008-09-10 d1ho8a_ Regulatory subunit H of the V-type ATPase
0047075 2821 2008-09-10 d1gw5a_ Clathrin adaptor core protein
0038302 1370 2005-09-08 d1gw5b_ Clathrin adaptor core protein
0042067 4 2005-09-08 d1oxja2 PHAT domain
0049893 333 2008-09-10 d1ug3a2 MIF4G domain-like
0038440 27 2005-09-08 d1h6ka3 MIF4G domain-like
0053212 465 2008-09-10 d2nsza1 MIF4G domain-like
0042225 142 2005-09-08 d1paqa_ MIF4G domain-like
0047241 834 2008-09-10 d1hu3a_ MIF4G domain-like
0049892 478 2008-09-10 d1ug3a1 MIF4G domain-like
0038439 29 2005-09-08 d1h6ka2 MIF4G domain-like
0044543 137 2005-09-08 d1uw4b_ MIF4G domain-like
0047129 61 2008-09-10 d1h6ka1 MIF4G domain-like
0047107 103 2008-09-10 d1h2tc3 MIF4G domain-like
0044481 273 2005-09-08 d1upka_ Mo25 protein
0043958 1136 2005-09-08 d1te4a_ PBS lyase HEAT-like repeat
0048666 816 2008-09-10 d1oyza_ PBS lyase HEAT-like repeat
0043817 179 2005-09-08 d1t06a_ BC3264-like
0051926 280 2008-09-10 d2b6ca1 BC3264-like
0049277 109 2008-09-10 d1rz4a2 Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
0050410 157 2008-09-10 d1w9ca_ Exportin HEAT-like repeat
0053206 383 2008-09-10 d2nppb1 B56-like
0051071 2287 2008-09-10 d1xqra1 HspBP1 domain
0051487 22 2008-09-10 d1z3xa1 GUN4-associated domain
0051211 22 2008-09-10 d1y6ia1 GUN4-associated domain
0052018 483 2008-09-10 d2bnxa1 Diap1 N-terninal region-like
0051473 488 2008-09-10 d1z2cb1 Diap1 N-terninal region-like
0051023 2648 2008-09-10 d1xm9a1 Plakophilin 1 helical region
0054109 23 2010-05-31 d2i9ca1 RPA1889-like