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Ankyrin repeat superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 19 SUPERFAMILY models representing the Ankyrin repeat superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047382 252 2008-09-10 d1iknd_ Ankyrin repeat
0049962 14532 2008-09-10 d1uoha_ Ankyrin repeat
0045980 191 2008-09-10 d1blxb_ Ankyrin repeat
0048640 15353 2008-09-10 d1ot8a_ Ankyrin repeat
0041145 750 2005-09-08 d1myoa_ Ankyrin repeat
0047720 1342 2008-09-10 d1k1aa_ Ankyrin repeat
0051277 31406 2008-09-10 d1ycsb1 Ankyrin repeat
0047365 196 2008-09-10 d1ihba_ Ankyrin repeat
0049488 6106 2008-09-10 d1sw6a_ Ankyrin repeat
0045933 1 2008-09-10 d1bd8a_ Ankyrin repeat
0048259 750 2008-09-10 d1n11a_ Ankyrin repeat
0035240 750 2005-09-08 d1awcb_ Ankyrin repeat
0047469 750 2008-09-10 d1ixva_ Ankyrin repeat
0050455 750 2008-09-10 d1wdya_ Ankyrin repeat
0046301 38 2008-09-10 d1dcqa1 Ankyrin repeat
0049331 20452 2008-09-10 d1s70b_ Ankyrin repeat
0045715 16766 2008-09-10 d1a5ea_ Ankyrin repeat
0047744 3 2008-09-10 d1k3zd_ Ankyrin repeat
0053922 12921 2010-05-31 d2fo1e1 Ankyrin repeat