SUPERFAMILY 1.75 HMM library and genome assignments server

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TPR-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 29 SUPERFAMILY models representing the TPR-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046583 98 2008-09-10 d1elra_ Tetratricopeptide repeat (TPR)
0049644 22 2008-09-10 d1tjca_ Tetratricopeptide repeat (TPR)
0052646 16541 2008-09-10 d2fbna1 Tetratricopeptide repeat (TPR)
0042932 258 2005-09-08 d1qqea_ Tetratricopeptide repeat (TPR)
0047366 26 2008-09-10 d1ihga1 Tetratricopeptide repeat (TPR)
0051642 2439 2008-09-10 d1zu2a1 Tetratricopeptide repeat (TPR)
0046753 113 2008-09-10 d1fcha_ Tetratricopeptide repeat (TPR)
0051037 750 2008-09-10 d1xnfa_ Tetratricopeptide repeat (TPR)
0046495 24 2008-09-10 d1e96b_ Tetratricopeptide repeat (TPR)
0048732 193 2008-09-10 d1pc2a_ Tetratricopeptide repeat (TPR)
0052100 4644 2008-09-10 d2c2la1 Tetratricopeptide repeat (TPR)
0040251 3181 2005-09-08 d1kt1a1 Tetratricopeptide repeat (TPR)
0051253 593 2008-09-10 d1ya0a1 Tetratricopeptide repeat (TPR)
0046585 204 2008-09-10 d1elwa_ Tetratricopeptide repeat (TPR)
0050358 12 2008-09-10 d1w3ba_ Tetratricopeptide repeat (TPR)
0045692 8974 2008-09-10 d1a17a_ Tetratricopeptide repeat (TPR)
0048699 19 2008-09-10 d1p5qa1 Tetratricopeptide repeat (TPR)
0039276 355 2005-09-08 d1iyga_ Tetratricopeptide repeat (TPR)
0047256 2058 2008-09-10 d1hxia_ Tetratricopeptide repeat (TPR)
0051240 513 2008-09-10 d1y8ma1 Tetratricopeptide repeat (TPR)
0047272 20 2008-09-10 d1hz4a_ Transcription factor MalT domain III
0052670 894 2008-09-10 d2ff4a2 BTAD-like
0051845 15 2008-09-10 d2awia2 PrgX C-terminal domain-like
0054096 351 2010-05-31 d2i6ha1 Atu0120-like
0054886 413 2010-05-31 d3cgha1 SusD-like
0054961 1173 2010-05-31 d3ejna1 SusD-like
0054895 1954 2010-05-31 d3ckca1 SusD-like
0054395 500 2010-05-31 d2ooea1 HAT/Suf repeat
0054057 3649 2010-05-31 d2hr2a1 CT2138-like