SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

L-aspartase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 18 SUPERFAMILY models representing the L-aspartase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035142 861 2005-09-08 d1aosa_ L-aspartase/fumarase
0038817 868 2005-09-08 d1i0aa_ L-aspartase/fumarase
0049643 3597 2008-09-10 d1tj7a_ L-aspartase/fumarase
0037332 890 2005-09-08 d1f1oa_ L-aspartase/fumarase
0044708 894 2005-09-08 d1vdka_ L-aspartase/fumarase
0039747 882 2005-09-08 d1jswa_ L-aspartase/fumarase
0038780 884 2005-09-08 d1hy0a_ L-aspartase/fumarase
0036521 889 2005-09-08 d1dofa_ L-aspartase/fumarase
0043207 888 2005-09-08 d1re5a_ L-aspartase/fumarase
0035216 883 2005-09-08 d1auwa_ L-aspartase/fumarase
0039358 891 2005-09-08 d1j3ua_ L-aspartase/fumarase
0037788 884 2005-09-08 d1fura_ L-aspartase/fumarase
0045086 890 2005-09-08 d1yfma_ L-aspartase/fumarase
0035831 892 2005-09-08 d1c3ca_ L-aspartase/fumarase
0042625 889 2005-09-08 d1q5na_ L-aspartase/fumarase
0035400 266 2005-09-08 d1b8fa_ HAL/PAL-like
0049554 1077 2008-09-10 d1t6ja_ HAL/PAL-like
0050346 1106 2008-09-10 d1w27a_ HAL/PAL-like