SUPERFAMILY 1.75 HMM library and genome assignments server

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GroEL equatorial domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the GroEL equatorial domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047404 1710 2008-09-10 d1ioka1 GroEL chaperone, ATPase domain
0041815 482 2005-09-08 d1oela1 GroEL chaperone, ATPase domain
0044965 415 2005-09-08 d1we3a1 GroEL chaperone, ATPase domain
0049413 1608 2008-09-10 d1sjpa1 GroEL chaperone, ATPase domain
0042602 930 2005-09-08 d1q3qa1 Group II chaperonin (CCT, TRIC), ATPase domain
0034904 888 2005-09-08 d1a6da1 Group II chaperonin (CCT, TRIC), ATPase domain
0034906 918 2005-09-08 d1a6db1 Group II chaperonin (CCT, TRIC), ATPase domain