SUPERFAMILY 1.75 HMM library and genome assignments server

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Transglutaminase, two C-terminal domains superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Transglutaminase, two C-terminal domains superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046894 273 2008-09-10 d1g0da3 Transglutaminase, two C-terminal domains
0046676 185 2008-09-10 d1f13a2 Transglutaminase, two C-terminal domains
0047886 270 2008-09-10 d1kv3a3 Transglutaminase, two C-terminal domains
0046893 154 2008-09-10 d1g0da2 Transglutaminase, two C-terminal domains
0047948 269 2008-09-10 d1l9na3 Transglutaminase, two C-terminal domains
0047885 220 2008-09-10 d1kv3a2 Transglutaminase, two C-terminal domains
0046677 247 2008-09-10 d1f13a3 Transglutaminase, two C-terminal domains
0047947 238 2008-09-10 d1l9na2 Transglutaminase, two C-terminal domains