SUPERFAMILY 1.75 HMM library and genome assignments server

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p53-like transcription factors superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 19 SUPERFAMILY models representing the p53-like transcription factors superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038725 69 2005-09-08 d1hu8a_ p53 DNA-binding domain-like
0045080 69 2005-09-08 d1ycsa_ p53 DNA-binding domain-like
0049543 70 2008-09-10 d1t4wa_ p53 DNA-binding domain-like
0047380 598 2008-09-10 d1ikna2 Rel/Dorsal transcription factors, DNA-binding domain
0046018 484 2008-09-10 d1bvoa_ Rel/Dorsal transcription factors, DNA-binding domain
0034796 72 2005-09-08 d1a02n2 Rel/Dorsal transcription factors, DNA-binding domain
0045705 461 2008-09-10 d1a3qa2 Rel/Dorsal transcription factors, DNA-binding domain
0048353 434 2008-09-10 d1nfka2 Rel/Dorsal transcription factors, DNA-binding domain
0046997 432 2008-09-10 d1gjia2 Rel/Dorsal transcription factors, DNA-binding domain
0039080 102 2005-09-08 d1imhc2 Rel/Dorsal transcription factors, DNA-binding domain
0034898 86 2005-09-08 d1a66a_ Rel/Dorsal transcription factors, DNA-binding domain
0045029 326 2005-09-08 d1xbra_ T-box
0038434 329 2005-09-08 d1h6fa_ T-box
0045953 348 2008-09-10 d1bg1a2 STAT DNA-binding domain
0050006 23 2008-09-10 d1uura2 STAT DNA-binding domain
0045949 348 2008-09-10 d1bf5a2 STAT DNA-binding domain
0046182 276 2008-09-10 d1cmoa_ RUNT domain
0048196 64 2008-09-10 d1mnna_ DNA-binding domain from NDT80
0044112 33 2005-09-08 d1ttua2 DNA-binding protein LAG-1 (CSL)