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C2 domain (Calcium/lipid-binding domain, CaLB) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 25 SUPERFAMILY models representing the C2 domain (Calcium/lipid-binding domain, CaLB) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035482 267 2005-09-08 d1bdya_ PLC-like (P variant)
0054798 2296 2010-05-31 d2zkmx2 PLC-like (P variant)
0036844 70 2005-09-08 d1e8ya2 PLC-like (P variant)
0048916 6198 2008-09-10 d1qasa2 PLC-like (P variant)
0054742 139 2010-05-31 d2yrba1 PLC-like (P variant)
0036823 381 2005-09-08 d1e7ua2 PLC-like (P variant)
0053207 1696 2008-09-10 d2nq3a1 PLC-like (P variant)
0036281 59 2005-09-08 d1d5ra1 PLC-like (P variant)
0038166 1390 2005-09-08 d1gmia_ PLC-like (P variant)
0053890 7327 2010-05-31 d2ep6a1 PLC-like (P variant)
0046160 6633 2008-09-10 d1cjya1 PLC-like (P variant)
0052179 2074 2008-09-10 d2cjsa1 PLC-like (P variant)
0044591 1992 2005-09-08 d1v27a_ Synaptotagmin-like (S variant)
0049647 3785 2008-09-10 d1tjxa_ Synaptotagmin-like (S variant)
0053329 2696 2008-09-10 d3rpba_ Synaptotagmin-like (S variant)
0036565 2565 2005-09-08 d1dqva1 Synaptotagmin-like (S variant)
0045699 3706 2008-09-10 d1a25a_ Synaptotagmin-like (S variant)
0050498 767 2008-09-10 d1wfma_ Synaptotagmin-like (S variant)
0044352 2222 2005-09-08 d1ugka_ Synaptotagmin-like (S variant)
0049239 4247 2008-09-10 d1rsya_ Synaptotagmin-like (S variant)
0046395 3731 2008-09-10 d1dsya_ Synaptotagmin-like (S variant)
0044929 2096 2005-09-08 d1w15a_ Synaptotagmin-like (S variant)
0050495 6206 2008-09-10 d1wfja_ Synaptotagmin-like (S variant)
0049161 3578 2008-09-10 d1rh8a_ Synaptotagmin-like (S variant)
0036566 2415 2005-09-08 d1dqva2 Synaptotagmin-like (S variant)