SUPERFAMILY 1.75 HMM library and genome assignments server

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gamma-Crystallin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 25 SUPERFAMILY models representing the gamma-Crystallin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042432 263 2005-09-08 d1prra2 Crystallins/Ca-binding development proteins
0048591 1391 2008-09-10 d1okia2 Crystallins/Ca-binding development proteins
0035105 493 2005-09-08 d1amma2 Crystallins/Ca-binding development proteins
0038546 230 2005-09-08 d1hdfa_ Crystallins/Ca-binding development proteins
0047120 1410 2008-09-10 d1h4ax2 Crystallins/Ca-binding development proteins
0034884 494 2005-09-08 d1a5da2 Crystallins/Ca-binding development proteins
0045707 1401 2008-09-10 d1a45a2 Crystallins/Ca-binding development proteins
0041510 349 2005-09-08 d1npsa_ Crystallins/Ca-binding development proteins
0048590 1384 2008-09-10 d1okia1 Crystallins/Ca-binding development proteins
0035104 700 2005-09-08 d1amma1 Crystallins/Ca-binding development proteins
0038504 494 2005-09-08 d1ha4a_ Crystallins/Ca-binding development proteins
0046582 1412 2008-09-10 d1elpa2 Crystallins/Ca-binding development proteins
0034883 687 2005-09-08 d1a5da1 Crystallins/Ca-binding development proteins
0051406 577 2008-09-10 d1ytqa1 Crystallins/Ca-binding development proteins
0035469 274 2005-09-08 d1bd7a_ Crystallins/Ca-binding development proteins
0040847 497 2005-09-08 d1m8ua2 Crystallins/Ca-binding development proteins
0048120 1453 2008-09-10 d1m8ua1 Crystallins/Ca-binding development proteins
0034930 493 2005-09-08 d1a7ha_ Crystallins/Ca-binding development proteins
0038408 687 2005-09-08 d1h4ax1 Crystallins/Ca-binding development proteins
0046581 1428 2008-09-10 d1elpa1 Crystallins/Ca-binding development proteins
0044983 3 2005-09-08 d1wkta_ Yeast killer toxin
0035560 2 2005-09-08 d1bhua_ Streptomyces metalloproteinase inhibitor, SMPI
0037390 3 2005-09-08 d1f53a_ Killer toxin-like protein SKLP
0035792 3 2005-09-08 d1c01a_ Plant antimicrobial protein MIAMP1
0038100 2 2005-09-08 d1gh5a_ Antifungal protein AFP1