SUPERFAMILY 1.75 HMM library and genome assignments server

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HSP20-like chaperones superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the HSP20-like chaperones superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043616 711 2005-09-08 d1shsa_ HSP20
0047015 794 2008-09-10 d1gmea_ HSP20
0051045 429 2008-09-10 d1xo9a_ Co-chaperone p23-like
0037037 143 2005-09-08 d1ejfa_ Co-chaperone p23-like
0043290 400 2005-09-08 d1rl1a_ GS domain
0050540 224 2008-09-10 d1wh0a_ GS domain
0050494 347 2008-09-10 d1wfia_ Nuclear movement domain
0050536 374 2008-09-10 d1wgva_ Nuclear movement domain