SUPERFAMILY 1.75 HMM library and genome assignments server

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PEBP-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the PEBP-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0034862 291 2005-09-08 d1a44a_ Phosphatidylethanolamine binding protein
0042907 264 2005-09-08 d1qoua_ Phosphatidylethanolamine binding protein
0040158 300 2005-09-08 d1kn3a_ Phosphatidylethanolamine binding protein
0035501 298 2005-09-08 d1beha_ Phosphatidylethanolamine binding protein
0053628 1082 2010-05-31 d1wpxb1 Phosphatidylethanolamine binding protein
0037790 288 2005-09-08 d1fuxa_ Prokaryotic PEBP-like proteins
0037630 287 2005-09-08 d1fjja_ Prokaryotic PEBP-like proteins