SUPERFAMILY 1.75 HMM library and genome assignments server

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C-terminal domain of transcriptional repressors superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 7 SUPERFAMILY models representing the C-terminal domain of transcriptional repressors superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045969 324 2008-09-10 d1biaa2 Biotin repressor (BirA)
0050688 150 2008-09-10 d1wqwa1 Biotin repressor (BirA)
0053944 785 2010-05-31 d2gcxa1 FeoA-like
0046873 122 2008-09-10 d1fx7a3 FeoA-like
0046044 81 2008-09-10 d1byma_ FeoA-like
0054012 866 2010-05-31 d2h3ja1 FeoA-like
0047363 24 2008-09-10 d1igub_ Transcriptional repressor protein KorB