SUPERFAMILY 1.75 HMM library and genome assignments server

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Translation proteins SH3-like domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 23 SUPERFAMILY models representing the Translation proteins SH3-like domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0054186 1120 2010-05-31 d2j01y1 Ribosomal proteins L24p and L21e
0052975 1121 2008-09-10 d2gyas1 Ribosomal proteins L24p and L21e
0054789 1085 2010-05-31 d2zjrr1 Ribosomal proteins L24p and L21e
0046771 1428 2008-09-10 d1ffkq_ Ribosomal proteins L24p and L21e
0046770 348 2008-09-10 d1ffkn_ Ribosomal proteins L24p and L21e
0049873 956 2008-09-10 d1ueba1 eIF5a N-terminal domain-like
0047482 750 2008-09-10 d1iz6a1 eIF5a N-terminal domain-like
0045975 816 2008-09-10 d1bkba1 eIF5a N-terminal domain-like
0050864 621 2008-09-10 d1x6oa1 eIF5a N-terminal domain-like
0047804 314 2008-09-10 d1khia1 eIF5a N-terminal domain-like
0052497 727 2008-09-10 d2eifa1 eIF5a N-terminal domain-like
0046768 1659 2008-09-10 d1ffka1 C-terminal domain of ribosomal protein L2
0054596 1110 2010-05-31 d2qamc1 C-terminal domain of ribosomal protein L2
0049199 1545 2008-09-10 d1rl2a1 C-terminal domain of ribosomal protein L2
0054175 1109 2010-05-31 d2j01d1 C-terminal domain of ribosomal protein L2
0054771 1110 2010-05-31 d2zjra1 C-terminal domain of ribosomal protein L2
0041642 205 2005-09-08 d1nz9a_ N-utilization substance G protein NusG, C-terminal domain
0040731 203 2005-09-08 d1m1ga2 N-utilization substance G protein NusG, C-terminal domain
0052479 127 2008-09-10 d2do3a1 SPT5 KOW domain-like
0054183 872 2010-05-31 d2j01t1 Ribosomal protein L19
0052974 878 2008-09-10 d2gyan1 Ribosomal protein L19
0054784 868 2010-05-31 d2zjrm1 Ribosomal protein L19
0054238 623 2010-05-31 d2joya1 Ribosomal protein L14e