SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

PDZ domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 79 SUPERFAMILY models representing the PDZ domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039028 3898 2005-09-08 d1ihja_ PDZ domain
0041243 3408 2005-09-08 d1n7ea_ PDZ domain
0042687 3477 2005-09-08 d1qava_ PDZ domain
0044366 3806 2005-09-08 d1uhpa_ PDZ domain
0045904 11314 2008-09-10 d1b8qa_ PDZ domain
0049876 11799 2008-09-10 d1uewa_ PDZ domain
0050486 10284 2008-09-10 d1wf7a_ PDZ domain
0050572 12980 2008-09-10 d1wi2a_ PDZ domain
0052727 11845 2008-09-10 d2fnea1 PDZ domain
0040399 3236 2005-09-08 d1l6oa_ PDZ domain
0042116 2975 2005-09-08 d1p1da2 PDZ domain
0044311 2879 2005-09-08 d1ueqa_ PDZ domain
0044623 1733 2005-09-08 d1v5la_ PDZ domain
0049521 11376 2008-09-10 d1t2ma1 PDZ domain
0050063 9178 2008-09-10 d1v62a_ PDZ domain
0050541 2942 2008-09-10 d1wh1a_ PDZ domain
0050835 14297 2008-09-10 d1x5qa1 PDZ domain
0052281 9981 2008-09-10 d2csja1 PDZ domain
0040294 2887 2005-09-08 d1kwaa_ PDZ domain
0041357 3176 2005-09-08 d1nf3c_ PDZ domain
0043410 2798 2005-09-08 d1ry4a_ PDZ domain
0044391 2392 2005-09-08 d1ujda_ PDZ domain
0049946 11445 2008-09-10 d1um1a_ PDZ domain
0050492 3880 2008-09-10 d1wfga_ PDZ domain
0050584 7207 2008-09-10 d1wifa_ PDZ domain
0051643 9857 2008-09-10 d1zuba1 PDZ domain
0040806 2828 2005-09-08 d1m5za_ PDZ domain
0042601 3633 2005-09-08 d1q3oa_ PDZ domain
0044337 2794 2005-09-08 d1ufxa_ PDZ domain
0044688 3729 2005-09-08 d1vb7a_ PDZ domain
0049781 9968 2008-09-10 d1u3ba2 PDZ domain
0050116 6970 2008-09-10 d1vaea_ PDZ domain
0050553 9180 2008-09-10 d1whda_ PDZ domain
0052663 11145 2008-09-10 d2fe5a1 PDZ domain
0041775 4122 2005-09-08 d1obza1 PDZ domain
0044310 3173 2005-09-08 d1uepa_ PDZ domain
0044399 2933 2005-09-08 d1ujva_ PDZ domain
0048900 11636 2008-09-10 d1q7xa_ PDZ domain
0050057 11011 2008-09-10 d1v5qa_ PDZ domain
0050516 8975 2008-09-10 d1wg6a_ PDZ domain
0050833 13319 2008-09-10 d1x5na1 PDZ domain
0052270 3458 2008-09-10 d2cs5a1 PDZ domain
0040042 3155 2005-09-08 d1kefa_ PDZ domain
0041246 2725 2005-09-08 d1n7ta_ PDZ domain
0042844 3375 2005-09-08 d1qlca_ PDZ domain
0044382 750 2005-09-08 d1uita_ PDZ domain
0045940 13003 2008-09-10 d1be9a_ PDZ domain
0049878 13598 2008-09-10 d1ueza_ PDZ domain
0050487 10252 2008-09-10 d1wf8a1 PDZ domain
0050574 9374 2008-09-10 d1wi4a1 PDZ domain
0051603 10189 2008-09-10 d1zoka1 PDZ domain
0053596 9311 2010-05-31 d1ozia_ PDZ domain
0038015 4196 2005-09-08 d1g9oa_ PDZ domain
0042269 3845 2005-09-08 d1pdra_ PDZ domain
0044315 2821 2005-09-08 d1uf1a_ PDZ domain
0044638 1754 2005-09-08 d1v6ba_ PDZ domain
0049780 11776 2008-09-10 d1u37a1 PDZ domain
0050114 11534 2008-09-10 d1va8a1 PDZ domain
0050550 12555 2008-09-10 d1whaa_ PDZ domain
0050836 11171 2008-09-10 d1x5ra1 PDZ domain
0052650 12875 2008-09-10 d2fcfa1 PDZ domain
0041555 2292 2005-09-08 d1ntea_ PDZ domain
0044398 2957 2005-09-08 d1ujua_ PDZ domain
0048138 10273 2008-09-10 d1mc7a_ PDZ domain
0049948 3496 2008-09-10 d1um7a_ PDZ domain
0050507 11953 2008-09-10 d1wfva_ PDZ domain
0050618 9905 2008-09-10 d1wjla_ PDZ domain
0052077 10531 2008-09-10 d2byga1 PDZ domain
0038828 2755 2005-09-08 d1i16a_ Interleukin 16
0050857 10115 2008-09-10 d1x6da1 Interleukin 16
0037485 3716 2005-09-08 d1fc6a3 Tail specific protease PDZ domain
0047731 186 2008-09-10 d1k32a1 Tail specific protease PDZ domain
0051242 6231 2008-09-10 d1y8ta1 HtrA-like serine proteases
0040319 1494 2005-09-08 d1ky9b2 HtrA-like serine proteases
0040455 1531 2005-09-08 d1lcya1 HtrA-like serine proteases
0040317 3611 2005-09-08 d1ky9a1 HtrA-like serine proteases
0043682 3371 2005-09-08 d1sota1 HtrA-like serine proteases
0054088 2288 2010-05-31 d2i4sa1 EpsC C-terminal domain-like
0054035 3047 2010-05-31 d2hgaa1 MTH1368 C-terminal domain-like