SUPERFAMILY 1.75 HMM library and genome assignments server

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Actin-crosslinking proteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Actin-crosslinking proteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046321 468 2008-09-10 d1dfca1 Fascin
0046323 450 2008-09-10 d1dfca3 Fascin
0046322 335 2008-09-10 d1dfca2 Fascin
0046324 384 2008-09-10 d1dfca4 Fascin
0047167 249 2008-09-10 d1hcda_ Histidine-rich actin-binding protein (hisactophilin)