SUPERFAMILY 1.75 HMM library and genome assignments server

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Translation proteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 27 SUPERFAMILY models representing the Translation proteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037974 191 2005-09-08 d1g7sa1 Elongation factors
0049290 678 2008-09-10 d1s0ua1 Elongation factors
0037246 1572 2005-09-08 d1exma1 Elongation factors
0046538 11921 2008-09-10 d1efca1 Elongation factors
0051646 9504 2008-09-10 d1zunb1 Elongation factors
0039670 2014 2005-09-08 d1jnya1 Elongation factors
0050420 11751 2008-09-10 d1wb1a1 Elongation factors
0049110 10263 2008-09-10 d1r5ba1 Elongation factors
0052053 5214 2008-09-10 d2bv3a1 Elongation factors
0036237 1473 2005-09-08 d1d2ea1 Elongation factors
0045034 1092 2005-09-08 d1xe1a_ Elongation factors
0050448 1954 2008-09-10 d1wdta1 Elongation factors
0037975 258 2005-09-08 d1g7sa2 Elongation factors
0037405 1413 2005-09-08 d1f60a1 Elongation factors
0048252 2192 2008-09-10 d1n0ua1 Elongation factors
0051767 526 2008-09-10 d2ahoa1 Elongation factors
0036231 616 2005-09-08 d1d1na_ Elongation factors
0040119 770 2005-09-08 d1kk1a1 Elongation factors
0050421 12 2008-09-10 d1wb1a2 Elongation factors
0054773 1151 2010-05-31 d2zjrb1 Ribosomal protein L3
0037530 329 2005-09-08 d1ffkb_ Ribosomal protein L3
0054177 1152 2010-05-31 d2j01e1 Ribosomal protein L3
0053993 1149 2010-05-31 d2gycb1 Ribosomal protein L3
0049446 212 2008-09-10 d1sqra_ Ribosomal protein L35ae
0052567 767 2008-09-10 d2f1la2 RimM N-terminal domain-like
0052543 193 2008-09-10 d2ey4c1 Gar1-like SnoRNP
0053860 1493 2010-05-31 d2e1ba1 AlaX-M N-terminal domain-like