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Trypsin-like serine proteases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 103 SUPERFAMILY models representing the Trypsin-like serine proteases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040351 1022 2005-09-08 d1l1ja_ Prokaryotic proteases
0043683 939 2005-09-08 d1sota2 Prokaryotic proteases
0047957 4939 2008-09-10 d1lcya2 Prokaryotic proteases
0042134 1956 2005-09-08 d1p3ca_ Prokaryotic proteases
0047218 1827 2008-09-10 d1hpga_ Prokaryotic proteases
0053300 1452 2008-09-10 d2sgaa_ Prokaryotic proteases
0043603 1380 2005-09-08 d1sgpe_ Prokaryotic proteases
0049034 2328 2008-09-10 d1qtfa_ Prokaryotic proteases
0047907 3800 2008-09-10 d1ky9a2 Prokaryotic proteases
0035042 970 2005-09-08 d1agja_ Prokaryotic proteases
0053299 763 2008-09-10 d2sfaa_ Prokaryotic proteases
0049010 2624 2008-09-10 d1qq4a_ Prokaryotic proteases
0051243 4608 2008-09-10 d1y8ta2 Prokaryotic proteases
0035182 311 2005-09-08 d1arba_ Prokaryotic proteases
0043039 947 2005-09-08 d1qy6a_ Prokaryotic proteases
0048635 8620 2008-09-10 d1os8a_ Prokaryotic proteases
0034935 2548 2005-09-08 d1a7sa_ Eukaryotic proteases
0035673 2585 2005-09-08 d1bqya_ Eukaryotic proteases
0037192 2910 2005-09-08 d1eufa_ Eukaryotic proteases
0038059 2979 2005-09-08 d1gdna_ Eukaryotic proteases
0045688 4082 2008-09-10 d1a0la_ Eukaryotic proteases
0046995 8640 2008-09-10 d1gj7.1 Eukaryotic proteases
0049389 8668 2008-09-10 d1sgfa_ Eukaryotic proteases
0035283 3129 2005-09-08 d1azza_ Eukaryotic proteases
0037075 2918 2005-09-08 d1elta_ Eukaryotic proteases
0037734 2857 2005-09-08 d1fq3a_ Eukaryotic proteases
0040887 2647 2005-09-08 d1mcta_ Eukaryotic proteases
0042416 2874 2005-09-08 d1ppfe_ Eukaryotic proteases
0043371 2879 2005-09-08 d1rtf.1 Eukaryotic proteases
0045413 2896 2005-09-08 d2pka.1 Eukaryotic proteases
0046575 8717 2008-09-10 d1ekbb_ Eukaryotic proteases
0051141 8825 2008-09-10 d1xx9a_ Eukaryotic proteases
0035122 2871 2005-09-08 d1ao5a_ Eukaryotic proteases
0035974 2829 2005-09-08 d1cgha_ Eukaryotic proteases
0037607 2895 2005-09-08 d1fiw.1 Eukaryotic proteases
0038219 2750 2005-09-08 d1gpza1 Eukaryotic proteases
0040590 2868 2005-09-08 d1lo6a_ Eukaryotic proteases
0042882 2638 2005-09-08 d1qnja_ Eukaryotic proteases
0044076 2916 2005-09-08 d1tona_ Eukaryotic proteases
0046306 8857 2008-09-10 d1ddja_ Eukaryotic proteases
0048628 8650 2008-09-10 d1orfa_ Eukaryotic proteases
0049863 8699 2008-09-10 d1ucy.1 Eukaryotic proteases
0034885 2893 2005-09-08 d1a5ia_ Eukaryotic proteases
0035578 2895 2005-09-08 d1bioa_ Eukaryotic proteases
0037131 2945 2005-09-08 d1eq9a_ Eukaryotic proteases
0037840 2994 2005-09-08 d1fxya_ Eukaryotic proteases
0040102 2909 2005-09-08 d1kigh_ Eukaryotic proteases
0041509 2931 2005-09-08 d1npma_ Eukaryotic proteases
0042529 2909 2005-09-08 d1pytd_ Eukaryotic proteases
0045561 2877 2005-09-08 d3rp2a_ Eukaryotic proteases
0046722 8719 2008-09-10 d1f7za_ Eukaryotic proteases
0052619 8685 2008-09-10 d2f91a1 Eukaryotic proteases
0035210 2913 2005-09-08 d1autc_ Eukaryotic proteases
0037635 2908 2005-09-08 d1fjsa_ Eukaryotic proteases
0038419 2625 2005-09-08 d1h4wa_ Eukaryotic proteases
0040858 2948 2005-09-08 d1m9ua_ Eukaryotic proteases
0042293 2647 2005-09-08 d1pfxc_ Eukaryotic proteases
0043220 2643 2005-09-08 d1rfna_ Eukaryotic proteases
0045318 3007 2005-09-08 d2hlca_ Eukaryotic proteases
0046511 8790 2008-09-10 d1eaxa_ Eukaryotic proteases
0048697 8774 2008-09-10 d1p57b_ Eukaryotic proteases
0035683 2949 2005-09-08 d1brup_ Eukaryotic proteases
0037599 2580 2005-09-08 d1fi8a_ Eukaryotic proteases
0038086 2653 2005-09-08 d1gg6.1 Eukaryotic proteases
0041958 2650 2005-09-08 d1op0a_ Eukaryotic proteases
0042606 2574 2005-09-08 d1q3xa1 Eukaryotic proteases
0046290 8689 2008-09-10 d1danh_ Eukaryotic proteases
0047191 8713 2008-09-10 d1hj9a_ Eukaryotic proteases
0048392 8606 2008-09-10 d1nn6a_ Eukaryotic proteases
0049401 3893 2008-09-10 d1shya_ Eukaryotic proteases
0034812 2629 2005-09-08 d1a0ja_ Eukaryotic proteases
0037077 2822 2005-09-08 d1elva1 Eukaryotic proteases
0037786 2960 2005-09-08 d1fuja_ Eukaryotic proteases
0040038 2921 2005-09-08 d1kdq.1 Eukaryotic proteases
0041149 2619 2005-09-08 d1mzaa_ Eukaryotic proteases
0042528 2895 2005-09-08 d1pytc_ Eukaryotic proteases
0043596 2914 2005-09-08 d1sgfg_ Eukaryotic proteases
0045461 2912 2005-09-08 d2stbe_ Eukaryotic proteases
0048030 8808 2008-09-10 d1ltoa_ Eukaryotic proteases
0037609 2897 2005-09-08 d1fiz.1 Eukaryotic proteases
0038297 2887 2005-09-08 d1gvza_ Eukaryotic proteases
0044104 2646 2005-09-08 d1trna_ Eukaryotic proteases
0046356 3916 2008-09-10 d1dlea_ Eukaryotic proteases
0047648 8649 2008-09-10 d1jou.1 Eukaryotic proteases
0050034 8712 2008-09-10 d1v2lt_ Eukaryotic proteases
0041537 434 2005-09-08 d1ns3.1 Viral proteases
0048262 8 2008-09-10 d1n1l.1 Viral proteases
0048877 2547 2008-09-10 d1q31a_ Viral proteases
0048133 1868 2008-09-10 d1mbma_ Viral proteases
0036154 390 2005-09-08 d1cu1a1 Viral proteases
0050139 814 2008-09-10 d1vcpa_ Viral proteases
0054138 1024 2010-05-31 d2ijob1 Viral proteases
0043779 132 2005-09-08 d1svpa_ Viral proteases
0035500 919 2005-09-08 d1befa_ Viral proteases
0046602 945 2008-09-10 d1ep5a_ Viral proteases
0042588 16 2005-09-08 d1q2wa_ Viral cysteine protease of trypsin fold
0053039 147 2008-09-10 d2hrva_ Viral cysteine protease of trypsin fold
0038512 246 2005-09-08 d1hava_ Viral cysteine protease of trypsin fold
0040353 259 2005-09-08 d1l1na_ Viral cysteine protease of trypsin fold
0036116 246 2005-09-08 d1cqqa_ Viral cysteine protease of trypsin fold
0040692 16 2005-09-08 d1lvoa_ Viral cysteine protease of trypsin fold
0042215 16 2005-09-08 d1p9sa_ Viral cysteine protease of trypsin fold
0053746 319 2010-05-31 d2bhga1 Viral cysteine protease of trypsin fold