SUPERFAMILY 1.75 HMM library and genome assignments server

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Barwin-like endoglucanases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Barwin-like endoglucanases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045260 39 2005-09-08 d2enga_ Eng V-like
0053626 347 2010-05-31 d1wc2a1 Eng V-like
0040416 39 2005-09-08 d1l8fa_ Eng V-like
0035740 100 2005-09-08 d1bw3a_ Barwin
0048258 509 2008-09-10 d1n10a2 Pollen allergen PHL P 1 N-terminal domain
0053935 382 2010-05-31 d2g5da1 MLTA-like
0053694 441 2010-05-31 d2ae0x1 MLTA-like
0054531 358 2010-05-31 d2pnwa1 MLTA-like