SUPERFAMILY 1.75 HMM library and genome assignments server

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ADC-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 19 SUPERFAMILY models representing the ADC-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048798 450 2008-09-10 d1ppya_ Pyruvoyl dependent aspartate decarboxylase, ADC
0044362 104 2005-09-08 d1uhe.1 Pyruvoyl dependent aspartate decarboxylase, ADC
0045381 688 2005-09-08 d2napa1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0049634 1474 2008-09-10 d1ti6a1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0047096 2216 2008-09-10 d1h0ha1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0046362 1492 2008-09-10 d1dmra1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0052771 4 2008-09-10 d2fug31 Formate dehydrogenase/DMSO reductase, C-terminal domain
0042560 493 2005-09-08 d1q16a1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0046942 1586 2008-09-10 d1g8ka1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0049658 1281 2008-09-10 d1tmoa1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0047857 1040 2008-09-10 d1kqfa1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0041851 404 2005-09-08 d1ogya1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0046625 1499 2008-09-10 d1eu1a1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0053128 2624 2008-09-10 d2iv2x1 Formate dehydrogenase/DMSO reductase, C-terminal domain
0042709 155 2005-09-08 d1qcsa1 Cdc48 N-terminal domain-like
0036728 93 2005-09-08 d1e32a1 Cdc48 N-terminal domain-like
0044985 18 2005-09-08 d1wlfa2 Cdc48 N-terminal domain-like
0036122 42 2005-09-08 d1cr5a1 Cdc48 N-terminal domain-like
0046237 118 2008-09-10 d1cz4a1 Cdc48 N-terminal domain-like