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Glycosyl hydrolase domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 55 SUPERFAMILY models representing the Glycosyl hydrolase domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038047 3 2005-09-08 d1gcya1 alpha-Amylases, C-terminal beta-sheet domain
0039554 234 2005-09-08 d1ji1a2 alpha-Amylases, C-terminal beta-sheet domain
0044468 200 2005-09-08 d1uoka1 alpha-Amylases, C-terminal beta-sheet domain
0046265 165 2008-09-10 d1d3ca3 alpha-Amylases, C-terminal beta-sheet domain
0049501 46 2008-09-10 d1szna1 alpha-Amylases, C-terminal beta-sheet domain
0052375 217 2008-09-10 d2d3na1 alpha-Amylases, C-terminal beta-sheet domain
0035222 34 2005-09-08 d1avaa1 alpha-Amylases, C-terminal beta-sheet domain
0038748 46 2005-09-08 d1hvxa1 alpha-Amylases, C-terminal beta-sheet domain
0040842 212 2005-09-08 d1m7xa2 alpha-Amylases, C-terminal beta-sheet domain
0044243 96 2005-09-08 d1uasa1 alpha-Amylases, C-terminal beta-sheet domain
0046138 179 2008-09-10 d1cgta3 alpha-Amylases, C-terminal beta-sheet domain
0047490 623 2008-09-10 d1j0ha2 alpha-Amylases, C-terminal beta-sheet domain
0051480 652 2008-09-10 d1z32x1 alpha-Amylases, C-terminal beta-sheet domain
0038397 132 2005-09-08 d1h3ga2 alpha-Amylases, C-terminal beta-sheet domain
0040295 11 2005-09-08 d1kwga1 alpha-Amylases, C-terminal beta-sheet domain
0045463 135 2005-09-08 d2taaa1 alpha-Amylases, C-terminal beta-sheet domain
0046454 217 2008-09-10 d1e43a1 alpha-Amylases, C-terminal beta-sheet domain
0049835 603 2008-09-10 d1ua7a1 alpha-Amylases, C-terminal beta-sheet domain
0052912 217 2008-09-10 d2gjpa1 alpha-Amylases, C-terminal beta-sheet domain
0037941 120 2005-09-08 d1g5aa1 alpha-Amylases, C-terminal beta-sheet domain
0039440 379 2005-09-08 d1jaea1 alpha-Amylases, C-terminal beta-sheet domain
0046235 748 2008-09-10 d1cyga3 alpha-Amylases, C-terminal beta-sheet domain
0049423 525 2008-09-10 d1smaa2 alpha-Amylases, C-terminal beta-sheet domain
0038712 33 2005-09-08 d1ht6a1 alpha-Amylases, C-terminal beta-sheet domain
0040788 205 2005-09-08 d1m53a1 alpha-Amylases, C-terminal beta-sheet domain
0043161 3 2005-09-08 d1r7aa1 alpha-Amylases, C-terminal beta-sheet domain
0046022 425 2008-09-10 d1bvza2 alpha-Amylases, C-terminal beta-sheet domain
0046947 652 2008-09-10 d1g94a1 alpha-Amylases, C-terminal beta-sheet domain
0050759 4 2008-09-10 d1wzaa1 alpha-Amylases, C-terminal beta-sheet domain
0038122 2 2005-09-08 d1gjwa1 alpha-Amylases, C-terminal beta-sheet domain
0040254 60 2005-09-08 d1ktba1 alpha-Amylases, C-terminal beta-sheet domain
0042794 248 2005-09-08 d1qhoa3 alpha-Amylases, C-terminal beta-sheet domain
0045140 35 2005-09-08 d2aaaa1 alpha-Amylases, C-terminal beta-sheet domain
0046335 652 2008-09-10 d1dhka1 alpha-Amylases, C-terminal beta-sheet domain
0037001 5 2005-09-08 d1eh9a2 alpha-Amylases, C-terminal beta-sheet domain
0039217 3 2005-09-08 d1iv8a1 alpha-Amylases, C-terminal beta-sheet domain
0041134 6 2005-09-08 d1mxga1 alpha-Amylases, C-terminal beta-sheet domain
0044280 46 2005-09-08 d1ud2a1 alpha-Amylases, C-terminal beta-sheet domain
0046151 149 2008-09-10 d1ciua3 alpha-Amylases, C-terminal beta-sheet domain
0048723 63 2008-09-10 d1pama3 alpha-Amylases, C-terminal beta-sheet domain
0051974 5 2008-09-10 d2bhua2 alpha-Amylases, C-terminal beta-sheet domain
0040699 3 2005-09-08 d1lwha1 alpha-Amylases, C-terminal beta-sheet domain
0043113 166 2005-09-08 d1r46a1 alpha-Amylases, C-terminal beta-sheet domain
0045946 403 2008-09-10 d1bf2a2 alpha-Amylases, C-terminal beta-sheet domain
0046504 290 2008-09-10 d1ea9c2 alpha-Amylases, C-terminal beta-sheet domain
0053917 100 2010-05-31 d2fhfa4 alpha-Amylases, C-terminal beta-sheet domain
0041849 2 2005-09-08 d1ogsa1 Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
0043015 24 2005-09-08 d1qw9a1 Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
0041486 117 2005-09-08 d1nofa1 Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
0044371 28 2005-09-08 d1uhva1 Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
0052124 98 2008-09-10 d2c7fa1 Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
0050403 64 2008-09-10 d1w91a1 Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
0038622 2 2005-09-08 d1hl9a1 Putative alpha-L-fucosidase C-terminal domain
0052584 1155 2008-09-10 d2f2ha3 Putative glucosidase YicI, domain 3
0049621 63 2008-09-10 d1tg7a4 Beta-galactosidase LacA, domain 2