SUPERFAMILY 1.75 HMM library and genome assignments server

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Mannose-binding lectins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the Mannose-binding lectins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049901 542 2008-09-10 d1ugx.1 Mannose-binding lectins
0039681 239 2005-09-08 d1jot.2 Mannose-binding lectins
0048649 548 2008-09-10 d1ouwa_ Mannose-binding lectins
0039368 247 2005-09-08 d1j4ta_ Mannose-binding lectins
0052959 523 2008-09-10 d2guda1 Mannose-binding lectins
0046071 569 2008-09-10 d1c3ma_ Mannose-binding lectins