SUPERFAMILY 1.75 HMM library and genome assignments server

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cAMP-binding domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 19 SUPERFAMILY models representing the cAMP-binding domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046856 816 2008-09-10 d1ft9a2 CO-sensing protein CooA, N-terminal domain
0046231 4769 2008-09-10 d1cx4a1 cAMP-binding domain
0048513 5114 2008-09-10 d1o7fa3 cAMP-binding domain
0054017 2002 2010-05-31 d2h6ca2 cAMP-binding domain
0048340 5359 2008-09-10 d1ne6a2 cAMP-binding domain
0051666 1703 2008-09-10 d1zyba2 cAMP-binding domain
0048882 5576 2008-09-10 d1q3ea_ cAMP-binding domain
0054946 1993 2010-05-31 d3e5ua2 cAMP-binding domain
0048512 5529 2008-09-10 d1o7fa2 cAMP-binding domain
0052861 4221 2008-09-10 d2gaua2 cAMP-binding domain
0048339 5447 2008-09-10 d1ne6a1 cAMP-binding domain
0050530 2695 2008-09-10 d1wgpa_ cAMP-binding domain
0046232 5049 2008-09-10 d1cx4a2 cAMP-binding domain
0054435 6074 2010-05-31 d2oz6a2 cAMP-binding domain
0048492 2648 2008-09-10 d1o5la1 cAMP-binding domain
0052199 1648 2008-09-10 d2coha2 cAMP-binding domain
0047248 6804 2008-09-10 d1hw5a2 cAMP-binding domain
0050263 5660 2008-09-10 d1vp6a_ cAMP-binding domain
0048600 555 2008-09-10 d1omia1 Listeriolysin regulatory protein PrfA, N-terminal domain