SUPERFAMILY 1.75 HMM library and genome assignments server

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TRAP-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 4 SUPERFAMILY models representing the TRAP-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035888 10 2005-09-08 d1c9sa_ Trp RNA-binding attenuation protein (TRAP)
0044946 11 2005-09-08 d1wapa_ Trp RNA-binding attenuation protein (TRAP)
0051361 443 2008-09-10 d1yoxa1 PA3696/SPS0176-like
0048752 439 2008-09-10 d1pg6a_ PA3696/SPS0176-like