SUPERFAMILY 1.75 HMM library and genome assignments server

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Single hybrid motif superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 12 SUPERFAMILY models representing the Single hybrid motif superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035479 1079 2005-09-08 d1bdoa_ Biotinyl/lipoyl-carrier proteins and domains
0048508 5761 2008-09-10 d1o78a_ Biotinyl/lipoyl-carrier proteins and domains
0047477 5548 2008-09-10 d1iyva_ Biotinyl/lipoyl-carrier proteins and domains
0038716 785 2005-09-08 d1htpa_ Biotinyl/lipoyl-carrier proteins and domains
0048969 5641 2008-09-10 d1qjoa_ Biotinyl/lipoyl-carrier proteins and domains
0047951 5494 2008-09-10 d1laba_ Biotinyl/lipoyl-carrier proteins and domains
0046989 5240 2008-09-10 d1ghka_ Biotinyl/lipoyl-carrier proteins and domains
0038124 1280 2005-09-08 d1gjxa_ Biotinyl/lipoyl-carrier proteins and domains
0048610 3960 2008-09-10 d1onla_ Biotinyl/lipoyl-carrier proteins and domains
0047763 4119 2008-09-10 d1k8ma_ Biotinyl/lipoyl-carrier proteins and domains
0042385 880 2005-09-08 d1pmra_ Biotinyl/lipoyl-carrier proteins and domains
0051241 4576 2008-09-10 d1y8ob1 Biotinyl/lipoyl-carrier proteins and domains