SUPERFAMILY 1.75 HMM library and genome assignments server

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Triosephosphate isomerase (TIM) superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 15 SUPERFAMILY models representing the Triosephosphate isomerase (TIM) superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048109 1957 2008-09-10 d1m6ja_ Triosephosphate isomerase (TIM)
0052045 1972 2008-09-10 d2btma_ Triosephosphate isomerase (TIM)
0044928 1552 2005-09-08 d1w0ma_ Triosephosphate isomerase (TIM)
0049669 1973 2008-09-10 d1tph1_ Triosephosphate isomerase (TIM)
0048284 1969 2008-09-10 d1n55a_ Triosephosphate isomerase (TIM)
0047237 1973 2008-09-10 d1htia_ Triosephosphate isomerase (TIM)
0051284 1956 2008-09-10 d1ydva_ Triosephosphate isomerase (TIM)
0038583 1257 2005-09-08 d1hg3a_ Triosephosphate isomerase (TIM)
0049668 1964 2008-09-10 d1tpfa_ Triosephosphate isomerase (TIM)
0048198 1974 2008-09-10 d1mo0a_ Triosephosphate isomerase (TIM)
0053375 1968 2008-09-10 d7tima_ Triosephosphate isomerase (TIM)
0045908 1975 2008-09-10 d1b9ba_ Triosephosphate isomerase (TIM)
0049680 1975 2008-09-10 d1trea_ Triosephosphate isomerase (TIM)
0035234 400 2005-09-08 d1aw1a_ Triosephosphate isomerase (TIM)
0049592 1971 2008-09-10 d1tcda_ Triosephosphate isomerase (TIM)