SUPERFAMILY 1.75 HMM library and genome assignments server

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Ribulose-phoshate binding barrel superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 36 SUPERFAMILY models representing the Ribulose-phoshate binding barrel superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049629 1509 2008-09-10 d1thfd_ Histidine biosynthesis enzymes
0039992 1295 2005-09-08 d1ka9f_ Histidine biosynthesis enzymes
0050322 1634 2008-09-10 d1vzwa1 Histidine biosynthesis enzymes
0048998 2438 2008-09-10 d1qo2a_ Histidine biosynthesis enzymes
0039781 1011 2005-09-08 d1jvna1 Histidine biosynthesis enzymes
0047125 2116 2008-09-10 d1h5ya_ Histidine biosynthesis enzymes
0047101 1984 2008-09-10 d1h1ya_ D-ribulose-5-phosphate 3-epimerase
0049675 1499 2008-09-10 d1tqxa_ D-ribulose-5-phosphate 3-epimerase
0049228 1786 2008-09-10 d1rpxa_ D-ribulose-5-phosphate 3-epimerase
0052714 1710 2008-09-10 d2flia1 D-ribulose-5-phosphate 3-epimerase
0049674 1589 2008-09-10 d1tqja_ D-ribulose-5-phosphate 3-epimerase
0047889 3211 2008-09-10 d1kv8a_ Decarboxylase
0053293 733 2008-09-10 d2q8la1 Decarboxylase
0036340 578 2005-09-08 d1dbta_ Decarboxylase
0052661 797 2008-09-10 d2fdsa1 Decarboxylase
0037027 353 2005-09-08 d1eixa_ Decarboxylase
0046387 1723 2008-09-10 d1dqwa_ Decarboxylase
0052356 3798 2008-09-10 d2czda1 Decarboxylase
0036628 780 2005-09-08 d1dvja_ Decarboxylase
0050290 1020 2008-09-10 d1vqta1 Decarboxylase
0052672 877 2008-09-10 d2ffca1 Decarboxylase
0038072 409 2005-09-08 d1geqa_ Tryptophan biosynthesis enzymes
0050916 571 2008-09-10 d1xcfa_ Tryptophan biosynthesis enzymes
0049004 588 2008-09-10 d1qopa_ Tryptophan biosynthesis enzymes
0050132 939 2008-09-10 d1vc4a_ Tryptophan biosynthesis enzymes
0048767 556 2008-09-10 d1piia1 Tryptophan biosynthesis enzymes
0047300 898 2008-09-10 d1i4na_ Tryptophan biosynthesis enzymes
0050062 550 2008-09-10 d1v5xa_ Tryptophan biosynthesis enzymes
0048432 865 2008-09-10 d1nsja_ Tryptophan biosynthesis enzymes
0049146 2006 2008-09-10 d1rd5a_ Tryptophan biosynthesis enzymes
0045712 1520 2008-09-10 d1a53a_ Tryptophan biosynthesis enzymes
0048768 843 2008-09-10 d1piia2 Tryptophan biosynthesis enzymes
0049922 1206 2008-09-10 d1ujpa_ Tryptophan biosynthesis enzymes
0051442 2153 2008-09-10 d1yxya1 NanE-like
0051164 507 2008-09-10 d1y0ea_ NanE-like
0051598 1519 2008-09-10 d1znna1 PdxS-like