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FMN-linked oxidoreductases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 28 SUPERFAMILY models representing the FMN-linked oxidoreductases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0042110 609 2005-09-08 d1p0ka_ FMN-linked oxidoreductases
0047026 3314 2008-09-10 d1goxa_ FMN-linked oxidoreductases
0050003 2104 2008-09-10 d1uuma_ FMN-linked oxidoreductases
0038308 741 2005-09-08 d1gwja_ FMN-linked oxidoreductases
0046501 2445 2008-09-10 d1ea0a2 FMN-linked oxidoreductases
0048661 1526 2008-09-10 d1oyba_ FMN-linked oxidoreductases
0052481 4427 2008-09-10 d2dora_ FMN-linked oxidoreductases
0042611 600 2005-09-08 d1q45a_ FMN-linked oxidoreductases
0047242 2811 2008-09-10 d1huva_ FMN-linked oxidoreductases
0050201 2421 2008-09-10 d1viza_ FMN-linked oxidoreductases
0038972 587 2005-09-08 d1icpa_ FMN-linked oxidoreductases
0046721 4293 2008-09-10 d1f76a_ FMN-linked oxidoreductases
0049708 2733 2008-09-10 d1tv5a1 FMN-linked oxidoreductases
0036457 694 2005-09-08 d1djna1 FMN-linked oxidoreductases
0044803 692 2005-09-08 d1vjia_ FMN-linked oxidoreductases
0048029 4817 2008-09-10 d1ltda1 FMN-linked oxidoreductases
0051899 4391 2008-09-10 d2b4ga1 FMN-linked oxidoreductases
0042445 960 2005-09-08 d1ps9a1 FMN-linked oxidoreductases
0047140 2308 2008-09-10 d1h7wa2 FMN-linked oxidoreductases
0050135 5165 2008-09-10 d1vcfa1 FMN-linked oxidoreductases
0038429 827 2005-09-08 d1h61a_ FMN-linked oxidoreductases
0046599 3692 2008-09-10 d1ep3a_ FMN-linked oxidoreductases
0049587 2594 2008-09-10 d1tb3a1 FMN-linked oxidoreductases
0052610 1266 2008-09-10 d2f6ua1 FMN-linked oxidoreductases
0036258 1296 2005-09-08 d1d3ga_ FMN-linked oxidoreductases
0044760 1189 2005-09-08 d1vhna_ FMN-linked oxidoreductases
0047996 2552 2008-09-10 d1llwa2 FMN-linked oxidoreductases
0051489 2214 2008-09-10 d1z41a1 FMN-linked oxidoreductases