SUPERFAMILY 1.75 HMM library and genome assignments server

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PLP-binding barrel superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 10 SUPERFAMILY models representing the PLP-binding barrel superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046278 1159 2008-09-10 d1d7ka2 Alanine racemase-like, N-terminal domain
0040168 201 2005-09-08 d1knwa2 Alanine racemase-like, N-terminal domain
0053370 1144 2008-09-10 d7odca2 Alanine racemase-like, N-terminal domain
0049723 2409 2008-09-10 d1twia2 Alanine racemase-like, N-terminal domain
0038618 229 2005-09-08 d1hkva2 Alanine racemase-like, N-terminal domain
0053309 1154 2008-09-10 d2toda2 Alanine racemase-like, N-terminal domain
0049144 1357 2008-09-10 d1rcqa2 Alanine racemase-like, N-terminal domain
0045930 2100 2008-09-10 d1bd0a2 Alanine racemase-like, N-terminal domain
0050171 1657 2008-09-10 d1vfsa2 Alanine racemase-like, N-terminal domain
0046211 527 2008-09-10 d1ct5a_ "Hypothetical" protein ybl036c