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Phosphoenolpyruvate/pyruvate domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 24 SUPERFAMILY models representing the Phosphoenolpyruvate/pyruvate domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045708 1988 2008-09-10 d1a49a2 Pyruvate kinase
0047978 2191 2008-09-10 d1liua2 Pyruvate kinase
0036701 472 2005-09-08 d1e0ta2 Pyruvate kinase
0045706 2308 2008-09-10 d1a3wa2 Pyruvate kinase
0048777 986 2008-09-10 d1pkla2 Pyruvate kinase
0050125 890 2008-09-10 d1vbga1 Pyruvate phosphate dikinase, C-terminal domain
0047777 2010 2008-09-10 d1kbla1 Pyruvate phosphate dikinase, C-terminal domain
0038453 382 2005-09-08 d1h6za1 Pyruvate phosphate dikinase, C-terminal domain
0047659 1322 2008-09-10 d1jqna_ Phosphoenolpyruvate carboxylase
0047660 1312 2008-09-10 d1jqoa_ Phosphoenolpyruvate carboxylase
0049391 1119 2008-09-10 d1sgja_ HpcH/HpaI aldolase
0046414 1672 2008-09-10 d1dxea_ HpcH/HpaI aldolase
0047484 1161 2008-09-10 d1izca_ HpcH/HpaI aldolase
0049789 1097 2008-09-10 d1u5ha_ HpcH/HpaI aldolase
0041093 284 2005-09-08 d1muma_ Phosphoenolpyruvate mutase/Isocitrate lyase-like
0049923 1363 2008-09-10 d1ujqa_ Phosphoenolpyruvate mutase/Isocitrate lyase-like
0048843 729 2008-09-10 d1pyma_ Phosphoenolpyruvate mutase/Isocitrate lyase-like
0046386 1212 2008-09-10 d1dqua_ Phosphoenolpyruvate mutase/Isocitrate lyase-like
0037440 303 2005-09-08 d1f8ma_ Phosphoenolpyruvate mutase/Isocitrate lyase-like
0047364 1213 2008-09-10 d1igwa_ Phosphoenolpyruvate mutase/Isocitrate lyase-like
0048498 841 2008-09-10 d1o66a_ Ketopantoate hydroxymethyltransferase PanB
0048078 838 2008-09-10 d1m3ua_ Ketopantoate hydroxymethyltransferase PanB
0042073 206 2005-09-08 d1oy0a_ Ketopantoate hydroxymethyltransferase PanB
0054448 111 2010-05-31 d2p10a1 Mll9387-like