SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Nicotinate/Quinolinate PRTase C-terminal domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 9 SUPERFAMILY models representing the Nicotinate/Quinolinate PRTase C-terminal domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052613 830 2008-09-10 d2f7fa1 NadC C-terminal domain-like
0048915 1209 2008-09-10 d1qapa1 NadC C-terminal domain-like
0051403 466 2008-09-10 d1ytda1 NadC C-terminal domain-like
0048485 527 2008-09-10 d1o4ua1 NadC C-terminal domain-like
0053067 468 2008-09-10 d2i14a1 NadC C-terminal domain-like
0049008 513 2008-09-10 d1qpoa1 NadC C-terminal domain-like
0051266 587 2008-09-10 d1ybea1 Monomeric nicotinate phosphoribosyltransferase C-terminal domain
0050244 738 2008-09-10 d1vlpa2 Monomeric nicotinate phosphoribosyltransferase C-terminal domain
0051319 760 2008-09-10 d1yira1 Monomeric nicotinate phosphoribosyltransferase C-terminal domain