SUPERFAMILY 1.75 HMM library and genome assignments server

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LeuD/IlvD-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the LeuD/IlvD-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045759 2238 2008-09-10 d1acoa1 LeuD-like
0051894 2264 2008-09-10 d2b3ya1 LeuD-like
0040389 148 2005-09-08 d1l5ja2 LeuD-like
0050083 2557 2008-09-10 d1v7la_ LeuD-like
0052934 1676 2008-09-10 d2gp4a1 IlvD/EDD C-terminal domain-like
0053017 109 2008-09-10 d2hi6a1 AF0055-like