SUPERFAMILY 1.75 HMM library and genome assignments server

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GroEL apical domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 8 SUPERFAMILY models representing the GroEL apical domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050458 1040 2008-09-10 d1we3a2 GroEL-like chaperone, apical domain
0047814 5363 2008-09-10 d1kida_ GroEL-like chaperone, apical domain
0049414 5349 2008-09-10 d1sjpa2 GroEL-like chaperone, apical domain
0047405 5349 2008-09-10 d1ioka2 GroEL-like chaperone, apical domain
0047016 1620 2008-09-10 d1gmla_ Group II chaperonin (CCT, TRIC), apical domain
0045814 1962 2008-09-10 d1assa_ Group II chaperonin (CCT, TRIC), apical domain
0045723 2146 2008-09-10 d1a6db2 Group II chaperonin (CCT, TRIC), apical domain
0048884 2639 2008-09-10 d1q3qa2 Group II chaperonin (CCT, TRIC), apical domain