SUPERFAMILY 1.75 HMM library and genome assignments server

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L domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 26 SUPERFAMILY models representing the L domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047132 9613 2008-09-10 d1h6ua2 Internalin LRR domain
0046244 14438 2008-09-10 d1d0ba_ Internalin LRR domain
0048505 22163 2008-09-10 d1o6va2 Internalin LRR domain
0046297 3426 2008-09-10 d1dcea3 Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
0046830 1764 2008-09-10 d1fo1a1 mRNA export factor tap
0045746 6245 2008-09-10 d1a9na_ U2A'-like
0039014 338 2005-09-08 d1igra1 L domain
0041267 308 2005-09-08 d1n8zc1 L domain
0053852 656 2010-05-31 d2dtge4 L domain
0040812 334 2005-09-08 d1m6ba2 L domain
0039222 437 2005-09-08 d1ivoa1 L domain
0041264 333 2005-09-08 d1n8yc2 L domain
0040811 385 2005-09-08 d1m6ba1 L domain
0039015 224 2005-09-08 d1igra2 L domain
0041268 323 2005-09-08 d1n8zc2 L domain
0053853 849 2010-05-31 d2dtge5 L domain
0041263 287 2005-09-08 d1n8yc1 L domain
0039223 335 2005-09-08 d1ivoa2 L domain
0047619 19523 2008-09-10 d1jl5a_ Leucine rich effector protein YopM
0051010 23299 2008-09-10 d1xkua_ Ngr ectodomain-like
0048059 14953 2008-09-10 d1m0za_ Ngr ectodomain-like
0053646 13690 2010-05-31 d1xwdc1 Ngr ectodomain-like
0050397 11002 2008-09-10 d1w8aa_ Ngr ectodomain-like
0053105 4447 2008-09-10 d2ifga3 Ngr ectodomain-like
0042103 5817 2005-09-08 d1ozna_ Ngr ectodomain-like
0041848 5217 2005-09-08 d1ogqa_ Polygalacturonase inhibiting protein PGIP