SUPERFAMILY 1.75 HMM library and genome assignments server

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ClpP/crotonase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 38 SUPERFAMILY models representing the ClpP/crotonase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052142 2854 2008-09-10 d2cbya1 Clp protease, ClpP subunit
0044160 766 2005-09-08 d1tyfa_ Clp protease, ClpP subunit
0052604 2082 2008-09-10 d2f6ia1 Clp protease, ClpP subunit
0049617 1133 2008-09-10 d1tg6a1 Clp protease, ClpP subunit
0051228 1456 2008-09-10 d1y7oa1 Clp protease, ClpP subunit
0039881 323 2005-09-08 d1k32a4 Tail specific protease, catalytic domain
0046748 1585 2008-09-10 d1fc6a4 Tail specific protease, catalytic domain
0039416 172 2005-09-08 d1j7xa_ Tail specific protease, catalytic domain
0052487 5922 2008-09-10 d2duba_ Crotonase-like
0036954 1880 2005-09-08 d1ef8a_ Crotonase-like
0048476 4585 2008-09-10 d1nzya_ Crotonase-like
0052793 4790 2008-09-10 d2fw2a1 Crotonase-like
0038805 1722 2005-09-08 d1hzda_ Crotonase-like
0044384 2195 2005-09-08 d1uiya_ Crotonase-like
0049386 4173 2008-09-10 d1sg4a1 Crotonase-like
0051137 7457 2008-09-10 d1xx4a_ Crotonase-like
0052608 7126 2008-09-10 d2f6qa1 Crotonase-like
0050758 3185 2008-09-10 d1wz8a1 Crotonase-like
0051719 7256 2008-09-10 d2a7ka1 Crotonase-like
0048890 3697 2008-09-10 d1q52a_ Crotonase-like
0038654 1135 2005-09-08 d1hnua_ Crotonase-like
0048518 3928 2008-09-10 d1o8ua_ Crotonase-like
0050444 4267 2008-09-10 d1wdka4 Crotonase-like
0046300 5032 2008-09-10 d1dcia_ Crotonase-like
0041934 1115 2005-09-08 d1on3a2 Biotin dependent carboxylase carboxyltransferase domain
0048770 2986 2008-09-10 d1pixa3 Biotin dependent carboxylase carboxyltransferase domain
0051040 5090 2008-09-10 d1xnya1 Biotin dependent carboxylase carboxyltransferase domain
0041793 931 2005-09-08 d1od2a1 Biotin dependent carboxylase carboxyltransferase domain
0050306 2116 2008-09-10 d1vrga2 Biotin dependent carboxylase carboxyltransferase domain
0051721 3276 2008-09-10 d2a7sa1 Biotin dependent carboxylase carboxyltransferase domain
0041933 1329 2005-09-08 d1on3a1 Biotin dependent carboxylase carboxyltransferase domain
0048769 3481 2008-09-10 d1pixa2 Biotin dependent carboxylase carboxyltransferase domain
0050305 5106 2008-09-10 d1vrga1 Biotin dependent carboxylase carboxyltransferase domain
0052629 1897 2008-09-10 d2f9yb1 Biotin dependent carboxylase carboxyltransferase domain
0051041 2253 2008-09-10 d1xnya2 Biotin dependent carboxylase carboxyltransferase domain
0041794 633 2005-09-08 d1od2a2 Biotin dependent carboxylase carboxyltransferase domain
0051722 2249 2008-09-10 d2a7sa2 Biotin dependent carboxylase carboxyltransferase domain
0052628 3511 2008-09-10 d2f9ya1 Biotin dependent carboxylase carboxyltransferase domain