SUPERFAMILY 1.75 HMM library and genome assignments server

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CheY-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 38 SUPERFAMILY models representing the CheY-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039925 6642 2005-09-08 d1k66a_ CheY-related
0046428 31384 2008-09-10 d1dz3a_ CheY-related
0048231 31459 2008-09-10 d1mvoa_ CheY-related
0049456 31429 2008-09-10 d1srra_ CheY-related
0051573 31515 2008-09-10 d1zgza1 CheY-related
0047867 31424 2008-09-10 d1krwa_ CheY-related
0048705 31495 2008-09-10 d1p6ua_ CheY-related
0054521 10163 2010-05-31 d2pl1a1 CheY-related
0045682 31362 2008-09-10 d1a04a2 CheY-related
0047555 31518 2008-09-10 d1jbea_ CheY-related
0048465 31495 2008-09-10 d1ny5a1 CheY-related
0050341 31517 2008-09-10 d1w25a1 CheY-related
0048129 31489 2008-09-10 d1mb3a_ CheY-related
0051386 31470 2008-09-10 d1ys7a2 CheY-related
0045852 31527 2008-09-10 d1b00a_ CheY-related
0047799 31498 2008-09-10 d1kgsa2 CheY-related
0048685 31318 2008-09-10 d1p2fa2 CheY-related
0050964 31522 2008-09-10 d1xhfa1 CheY-related
0051898 19571 2008-09-10 d2b4aa1 CheY-related
0043525 5890 2005-09-08 d1s8na_ CheY-related
0047296 29314 2008-09-10 d1i3ca_ CheY-related
0048463 31508 2008-09-10 d1nxoa_ CheY-related
0049761 31412 2008-09-10 d1u0sy_ CheY-related
0051574 31521 2008-09-10 d1zh2a1 CheY-related
0046294 31178 2008-09-10 d1dbwa_ CheY-related
0048975 31354 2008-09-10 d1qkka_ CheY-related
0051318 31372 2008-09-10 d1yioa2 CheY-related
0045700 31167 2008-09-10 d1a2oa1 CheY-related
0047753 29810 2008-09-10 d1k68a_ CheY-related
0048656 31307 2008-09-10 d1oxbb_ CheY-related
0050342 26010 2008-09-10 d1w25a2 CheY-related
0051860 20114 2008-09-10 d2ayza1 CheY-related
0046299 8493 2008-09-10 d1dcfa_ Receiver domain of the ethylene receptor
0048997 901 2008-09-10 d1qo0d_ Positive regulator of the amidase operon AmiR
0046075 137 2008-09-10 d1c4ka1 Ornithine decarboxylase N-terminal "wing" domain
0048066 421 2008-09-10 d1m2fa_ N-terminal domain of the circadian clock protein KaiA
0051859 72 2008-09-10 d2ayya1 RcsC linker domain-like
0051229 26 2008-09-10 d1y7pa1 AF1403 C-terminal domain-like