SUPERFAMILY 1.75 HMM library and genome assignments server

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Flavoproteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 32 SUPERFAMILY models representing the Flavoproteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036210 520 2005-09-08 d1czna_ Flavodoxin-related
0045274 513 2005-09-08 d2fcra_ Flavodoxin-related
0048535 1735 2008-09-10 d1oboa_ Flavodoxin-related
0046862 2147 2008-09-10 d1fuea_ Flavodoxin-related
0035735 457 2005-09-08 d1bvyf_ Flavodoxin-related
0052810 2099 2008-09-10 d2fz5a1 Flavodoxin-related
0044895 263 2005-09-08 d1vmea1 Flavodoxin-related
0051357 1921 2008-09-10 d1yoba1 Flavodoxin-related
0036778 381 2005-09-08 d1e5da1 Flavodoxin-related
0046705 2641 2008-09-10 d1f4pa_ Flavodoxin-related
0053358 2313 2008-09-10 d5nula_ Flavodoxin-related
0045773 867 2008-09-10 d1ag9a_ Flavodoxin-related
0051274 365 2008-09-10 d1ycga1 Flavodoxin-related
0047543 2000 2008-09-10 d1ja1a2 Cytochrome p450 reductase N-terminal domain-like
0051328 1794 2008-09-10 d1ykga1 Cytochrome p450 reductase N-terminal domain-like
0049652 1611 2008-09-10 d1tlla2 Cytochrome p450 reductase N-terminal domain-like
0049548 2321 2008-09-10 d1t5ba_ Quinone reductase
0046417 867 2008-09-10 d1dxqa_ Quinone reductase
0042957 485 2005-09-08 d1qrda_ Quinone reductase
0046267 869 2008-09-10 d1d4aa_ Quinone reductase
0049640 2328 2008-09-10 d1tika_ Quinone reductase
0049022 2696 2008-09-10 d1qr2a_ Quinone reductase
0052813 787 2008-09-10 d2fzva1 NADPH-dependent FMN reductase
0049507 1246 2008-09-10 d1t0ia_ NADPH-dependent FMN reductase
0048395 1055 2008-09-10 d1nni1_ NADPH-dependent FMN reductase
0049241 1011 2008-09-10 d1rtta_ NADPH-dependent FMN reductase
0043718 446 2005-09-08 d1sqsa_ Hypothetical protein SP1951
0049201 2934 2008-09-10 d1rlia_ Hypothetical protein YwqN
0049202 1044 2008-09-10 d1rlja_ Flavoprotein NrdI
0051820 2348 2008-09-10 d2arka1 WrbA-like
0051705 1577 2008-09-10 d2a5la1 WrbA-like
0051281 3360 2008-09-10 d1ydga_ WrbA-like