SUPERFAMILY 1.75 HMM library and genome assignments server

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Formate/glycerate dehydrogenase catalytic domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 13 SUPERFAMILY models representing the Formate/glycerate dehydrogenase catalytic domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047511 2680 2008-09-10 d1j4aa2 Formate/glycerate dehydrogenases, substrate-binding domain
0042915 68 2005-09-08 d1qp8a2 Formate/glycerate dehydrogenases, substrate-binding domain
0052457 719 2008-09-10 d2dlda2 Formate/glycerate dehydrogenases, substrate-binding domain
0048809 750 2008-09-10 d1psda2 Formate/glycerate dehydrogenases, substrate-binding domain
0046421 409 2008-09-10 d1dxya2 Formate/glycerate dehydrogenases, substrate-binding domain
0051306 3312 2008-09-10 d1ygya2 Formate/glycerate dehydrogenases, substrate-binding domain
0048240 32 2008-09-10 d1mx3a2 Formate/glycerate dehydrogenases, substrate-binding domain
0045380 655 2005-09-08 d2naca2 Formate/glycerate dehydrogenases, substrate-binding domain
0038058 750 2005-09-08 d1gdha2 Formate/glycerate dehydrogenases, substrate-binding domain
0037438 16 2005-09-08 d1f8ga2 L-alanine dehydrogenase-like
0042341 297 2005-09-08 d1pjca2 L-alanine dehydrogenase-like
0034926 210 2005-09-08 d1a7aa2 S-adenosylhomocystein hydrolase
0050091 26 2008-09-10 d1v8ba2 S-adenosylhomocystein hydrolase