SUPERFAMILY 1.75 HMM library and genome assignments server

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Class I glutamine amidotransferase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 35 SUPERFAMILY models representing the Class I glutamine amidotransferase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039782 907 2005-09-08 d1jvna2 Class I glutamine amidotransferases (GAT)
0045752 4434 2008-09-10 d1a9xb2 Class I glutamine amidotransferases (GAT)
0050645 4398 2008-09-10 d1wl8a1 Class I glutamine amidotransferases (GAT)
0042722 1617 2005-09-08 d1qdlb_ Class I glutamine amidotransferases (GAT)
0047771 3030 2008-09-10 d1ka9h_ Class I glutamine amidotransferases (GAT)
0049527 1213 2008-09-10 d1t3ta2 Class I glutamine amidotransferases (GAT)
0049298 1416 2008-09-10 d1s1ma1 Class I glutamine amidotransferases (GAT)
0051730 6249 2008-09-10 d2a9va1 Class I glutamine amidotransferases (GAT)
0038211 1733 2005-09-08 d1gpma2 Class I glutamine amidotransferases (GAT)
0043181 1435 2005-09-08 d1r9ga_ Class I glutamine amidotransferases (GAT)
0047949 4822 2008-09-10 d1l9xa_ Class I glutamine amidotransferases (GAT)
0050138 4525 2008-09-10 d1vcoa1 Class I glutamine amidotransferases (GAT)
0042648 835 2005-09-08 d1q7ra_ Class I glutamine amidotransferases (GAT)
0047324 4240 2008-09-10 d1i7qb_ Class I glutamine amidotransferases (GAT)
0051742 580 2008-09-10 d2abwa1 Class I glutamine amidotransferases (GAT)
0039988 1351 2005-09-08 d1k9vf_ Class I glutamine amidotransferases (GAT)
0048482 4791 2008-09-10 d1o1ya_ Class I glutamine amidotransferases (GAT)
0047286 4225 2008-09-10 d1i1qb_ Class I glutamine amidotransferases (GAT)
0048285 1931 2008-09-10 d1n57a_ DJ-1/PfpI
0052668 3118 2008-09-10 d2fexa1 DJ-1/PfpI
0042074 471 2005-09-08 d1oy1a_ DJ-1/PfpI
0053594 5238 2010-05-31 d1oi4a1 DJ-1/PfpI
0037903 1690 2005-09-08 d1g2ia_ DJ-1/PfpI
0043013 218 2005-09-08 d1qvza_ DJ-1/PfpI
0049828 2385 2008-09-10 d1u9ca_ DJ-1/PfpI
0042273 894 2005-09-08 d1pe0a_ DJ-1/PfpI
0051738 2690 2008-09-10 d2ab0a1 DJ-1/PfpI
0046130 2039 2008-09-10 d1cf9a1 Catalase, C-terminal domain
0049495 2713 2008-09-10 d1sy7a1 Catalase, C-terminal domain
0046884 1860 2008-09-10 d1fyea_ Aspartyl dipeptidase PepE
0047898 191 2008-09-10 d1kwga3 A4 beta-galactosidase middle domain
0049505 464 2008-09-10 d1t0ba_ ThuA-like
0051592 614 2008-09-10 d1zl0a2 LD-carboxypeptidase A N-terminal domain-like
0052900 351 2008-09-10 d2ghra1 HTS-like
0053950 364 2010-05-31 d2gk3a1 STM3548-like