SUPERFAMILY 1.75 HMM library and genome assignments server

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PreATP-grasp domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 22 SUPERFAMILY models representing the PreATP-grasp domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045749 3179 2008-09-10 d1a9xa3 BC N-terminal domain-like
0047049 1071 2008-09-10 d1gsoa2 BC N-terminal domain-like
0049945 2625 2008-09-10 d1ulza2 BC N-terminal domain-like
0037275 750 2005-09-08 d1eyza2 BC N-terminal domain-like
0050407 2568 2008-09-10 d1w96a2 BC N-terminal domain-like
0046403 1699 2008-09-10 d1dv1a2 BC N-terminal domain-like
0045750 3277 2008-09-10 d1a9xa4 BC N-terminal domain-like
0050232 1038 2008-09-10 d1vkza2 BC N-terminal domain-like
0045887 784 2008-09-10 d1b6ra2 BC N-terminal domain-like
0046456 1143 2008-09-10 d1e4ea1 D-Alanine ligase N-terminal domain
0047407 1182 2008-09-10 d1iowa1 D-Alanine ligase N-terminal domain
0046561 1140 2008-09-10 d1ehia1 D-Alanine ligase N-terminal domain
0047047 446 2008-09-10 d1gsaa1 Prokaryotic glutathione synthetase, N-terminal domain
0053014 189 2008-09-10 d2hgsa1 Eukaryotic glutathione synthetase, substrate-binding domain
0048058 189 2008-09-10 d1m0wa1 Eukaryotic glutathione synthetase, substrate-binding domain
0045826 133 2008-09-10 d1auva1 Synapsin domain
0047321 133 2008-09-10 d1i7na1 Synapsin domain
0049858 46 2008-09-10 d1uc8a1 Lysine biosynthesis enzyme LysX, N-terminal domain
0053120 192 2008-09-10 d2io8a1 Glutathionylspermidine synthase substrate-binding domain-like
0054494 81 2010-05-31 d2pbza1 PurP N-terminal domain-like
0054654 81 2010-05-31 d2r85a1 PurP N-terminal domain-like
0054652 81 2010-05-31 d2r7ka1 PurP N-terminal domain-like